PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_7DFB74CDE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 65aa    MW: 7903.85 Da    PI: 6.9397
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_7DFB74CDE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.94.4e-102564140
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                           +fYn+Y+ e GFsvr+s+ +  + n +i+ r+fvCs eg 
  Traes_2DL_7DFB74CDE.1 25 RFYNKYGLEKGFSVRRSYVEWDESNCHIILRKFVCSHEGV 64
                           6*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-72564IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
VSHESMMEYY HIANKMFNSE DEGYRFYNKY GLEKGFSVRR SYVEWDESNC HIILRKFVCS  60
HEGVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-94HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462525.12e-21hypothetical protein SORBIDRAFT_02g027384, partial
RefseqXP_010231784.22e-21PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5BWJ95e-42W5BWJ9_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.17e-21(Brachypodium distachyon)
STRINGSb02g027384.15e-21(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]